Opening and Checking an Image

Figure 1

Displaying an image with imshow

Figure 2

Transposed image

Figure 3

2-dimensional slice

Figure 4

All image channels

Figure 5

All image channels

Figure 6

ND2 image

Figure 7

ND2 image

Applying Filters

Figure 1

Filters

Figure 2

Rolling ball

Figure 3

Dogs and logs

Thresholding and Segmentation

Figure 1

Threshold

Figure 2

Histogram

Figure 3

Otsu and Triangle thresholds

Figure 4

Image transformations

Figure 5

Binary fill holes

Figure 6

Image labelling

Figure 7

Distance transform

Figure 8

Local maxima

Figure 9

Watershed segmentation

Figure 10

Masked watershed

Measurements

Figure 1

Mean intensities

Introduction to Napari

Figure 1

Napari layers

Figure 2

Gaussian filter controls

Figure 3

Gaussian filter

Figure 4

Napari Python console